Program
This Symposium has Concluded
August: 18 | 19 | 20 | 21 | 22 | 23
Saturday, August 18
Symposium and Mini-Symposium Registration
Grand Ballroom Vestibule
| 3:00pm | Registration | |
Sunday, August 19
Symposium and Mini-Symposium Registration
Grand Ballroom Vestibule
| 7:30am | Registration | |
Mini-Symposium on Protein Quantitation and Dynamics
Grand Ballroom
Chair: Simon Gaskell, University of Manchester, Manchester, United Kingdom
| 8:30am | MS.1 | Quantitative Proteomics: An Overview Ruedi Aebersold, Institute for Molecular Systems Biology, ETH Zurich and Institute for Systems Biology, Seattle, WA, USA |
| 9:30 | MS.2 | Profiling Protein Expression by Label-Free Quantitative Mass Spectrometry Pedro Cutillas, Bart’s Institute of Cancer, Queen Mary University of London, United Kingdom |
| 10:10 | Coffee break | |
| 10:50 | MS.3 | Profiling Unlabeled Peptide Ions: A Versatile Approach to Quantitative Proteomics and to Mapping of Post-Translational Modifications Pierre Thibault, Université de Montréal, Montréal, Canada |
| 11:30 | MS.4 | Quantitative Approaches for Analysis of Regulatory Post-Translational Modifications Jeffrey Gorman, Queensland Institute of Medical Research, Royal Brisbane Hospital, Herston, Queensland, Australia |
| 12:10pm | Lunch | |
Chair: John Stults, Genentech, South San Francisco, CA
| 1:40pm | MS.5 | Quantification by Spectral Counting in Large Datasets Eric Deutsch, Institute for Systems Biology, Seattle, WA, USA |
| 2:20 | MS.6 | Protein Abundance Ratios for Microbial Proteomes Murray Hackett, University of Washington, Seattle, WA, USA |
| 3:00 | MS.7 | Quantitative Proteomics in the Context of Systems Biology Simon Gaskell, The University of Manchester, Manchester, United Kingdom |
| 3:40 | MS.8 | Analysis of Protein Levels and Phosphorylation Stoichiometry from Complex Samples using the iTRAQ Reagent Jonathan Trinidad, University of California, San Francisco, CA, USA |
Grand Ballroom Vestibule
| 4:00pm | Symposium Registration | |
Gold & Venetian Rooms
| 4:00pm | Symposium Poster Set-up | |
Pavilion Room
| 6:00pm | Opening Reception | |
Monday, August 20
Grand Ballroom Vestibule
| 7:15am | Registration | |
Symposium
Grand Ballroom
| 8:15am | Introduction | |
Chair: Ralph Bradshaw, University of California, San Francisco, CA
| 8:30am | 1.1 | Plenary Lecture Expression Proteomics at Last: The Determination of Proteome Wide Protein Abundance Changes by SILAC and High Resolution Mass Spectrometry Matthias Mann, Max-Planck Institute for Biochemistry, Martinsried, Germany |
Chair: Jan van Oostrum, Novartis Institutes of BioMedical Research, Basel, Switzerland
| 9:30am | 1.2 | Statistical Analysis of Quantitative Proteomics Datasets via Normalized Spectral Abundance Factors Michael Washburn, Stowers Institute for Medical Research, Kansas City, MO, USA |
| 10:10 | Coffee break | |
| 10:30 | 1.3 | Insight Into Cell Biology from Physical and Genetic Protein Interactions Gerard Cagney, Conway Institute, University College Dublin, Dublin, Ireland |
| 11:10 | 1.4 | Exploiting peptide identification databases for improved bioinformatics for proteomics Simon Hubbard, University of Manchester, Manchester, United Kingdom |
| 11:50 | 1.5 | Refining Peptide LC/MS Analysis for Qualitative and Quantitative Proteomics Clive Slaughter, St. Jude Children’s Research Hospital, Memphis, TN, USA |
| 12:30pm | Lunch | |
Chair: John Stults, Genentech, South San Francisco, CA, USA
| 2:00pm | 2.1 | Deciphering the Dynamics of Proteasome Interacting Proteins Using Quantitative Mass Spectrometry Lan Huang, University of California, Irvine, CA, USA |
| 2:40 | 2.2 | The Proteome Biology of Proteasome Complexes: Molecular Organization, Function, and Regulation Peipei Ping, University of California, School of Medicine, Los Angeles, CA, USA |
| 3:20 | 2.3 | Identification of Newly Synthesized Proteins Using Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Erin Schuman, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA |
Symposium Poster Session A
Gold & Venetian Rooms
Co-Chairs: David Maltby and Frank Li, University of California, San Francisco, CA
| 4:00pm | Poster Session A | |
Tuesday, August 21
Symposium
Grand Ballroom
Chair: Simon Gaskell, University of Manchester, Manchester, United Kingdom
| 8:30am | 3.1 | Plenary Lecture Innovative Technology for the Study of Cell Signaling Donald Hunt, University of Virginia, Charlottesville, VA, USA |
Chair: Steve Carr, Broad Institute of MIT and Harvard, Cambridge, MA, USA
| 9:30am | 3.2 | TiMAC - A New Phosphoproteomic Strategy for the Separation of Mono- From Multiply Phosphorylated Peptides Combined with Optimized Tandem MS Mass Spectrometric Analysis Martin Larsen, University of Southern Denmark, Odense, Denmark |
| 10:10 | Coffee break | |
| 10:30 | 3.3 | Proteomic Study of a Steroid Signal Transduction Pathway in Plants Zhi-Yong Wang, Carnegie Institute, Stanford, CA, USA |
| 11:10 | 3.4 | Comprehensive Phosphoproteome Analyses of Leukemic Hematopoietic Stem Cells to Uncover the Molecular Basis of Self-Renewal Pierre Thibault, Université de Montréal, Montréal, Canada |
| 11:50 | 3.5 | New Technology to Detect and Monitor the Post-Translational Modification Events that Commit Human Embryonic Stem Cells to Exit the Pluripotent State Joshua Coon, University of Wisconsin, Madison, WI, USA |
| 12:30pm | Lunch | |
Chair: Ralph Bradshaw, University of California, San Francisco, CA
| 2:00pm | 4.1 | Interrogation of Cellular Signalling Pathways Using Protein Microarrays Jan van Oostrum, Novartis Institutes of BioMedical Research, Basel, Switzerland |
| 2:40 | 4.2 | Dynamic Interplay Between GlcNAc and Phosphate on Regulatory Proteins Gerald Hart, Johns Hopkins University School of Medicine, Baltimore, MD, USA |
| 3:20 | 4.3 | Mass Spectrometry as a Detector for Protein Ubquitination Steven Gygi, Harvard Medical School, Boston, MA, USA |
Symposium Poster Session B
Gold & Venetian Rooms
Co-Chairs: Shenheng Guan and Juan Oses-Prieto, University of California, San Francisco, CA, USA
| 4:00pm | Poster Session B | |
Wednesday, August 22
Symposium
Grand Ballroom
Chair: John Stults, Genentech, South San Francisco, CA, USA
| 8:30am | 5.1 | Systems-Wide Analysis of Protein Complexes in Saccharomyces cerevisiae Anne-Claude Gavin, European Molecular Biology Laboratory, Heidelberg, Germany |
| 9:10 | 5.2 | Degradomics: the Proteolysis of Cell Death James A. Wells, University of California, San Francisco, CA, USA |
| 9:50 | 5.3 | Characterization of GSK3 Dependent Circadian Phosphoproteome Krista Kaasik, University of California, San Francisco, CA, USA |
| 10:30 | Coffee break | |
Chair: Ralph Bradshaw, University of California, San Francisco, CA, USA
| 10:50am | 5.4 | Plenary Lecture Interactome Networks Marc Vidal, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA |
| 11:50 | Lunch | |
Chair: Gerard Cagney, Conway Institute, University College Dublin, Ireland, United Kingdom
| 1:20pm | 6.1 | The Study of Organelle Dynamics Using Stable Isotope Labeling Kathryn Lilley, University of Cambridge, United Kingdom |
| 2:00 | 6.2 | Elucidating Interacting Regions Within a Large Protein Complex Through Chemical Crosslinking and Mass Spectrometry Gerald Carlson, University of Kansas Medical Center, Kansas City, KS, USA |
Co-Chairs: Katalin Medzihradszky and Mike Trnka, University of California, San Francisco, CA, USA
| 2:40pm | Poster Session C | |
Symposium Dinner
| 6:00pm | Conference Dinner Reception Fountain/Crystal Rooms |
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| 7:00 | Conference Dinner Crown Room |
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Thursday, August 23
Symposium
Grand Ballroom
Chair: A. L. Burlingame, University of California, San Francisco, CA, USA
| 8:30am | 7.1 | Sperm Chromatin Proteomics Identifies Evolutionarily Conserved Fertility Factors Diana Chu, San Francisco State University, CA, USA |
| 9:10 | 7.2 | Walking in the Proteomic Footprints of Viral Infection Ileana Cristea, Rockefeller University, New York, NY, USA |
| 9:50 | 7.3 | Exploiting Viruses to Identify Critical Interactions and Therapeutic Targets in the Cellular Networks That Regulate Growth and Survival Clodagh O’Shea, Salk Institute for Biological Studies, La Jolla, CA, USA |
| 10:30 | Coffee break | |
| 11:00 | 7.4 | High Throughput Characterization of Amplified Nucleic Acids by ESI-TOF Mass Spectrometry: Applications in Pathogen Detection and Characterization Steven Hofstadler, Ibis Biosciences, Carlsbad, CA, USA |
| 11:40 | Lunch | |
Chair: John Stults, Genentech, South San Francisco, CA, USA
| 1:40pm | 8.1 | Exploration of the Human Muscle Proteome in Diabetes Susan Weintraub, University of Texas Health Science Center, San Antonio, TX, USA |
| 2:20 | 8.2 | Protein Biomarker Identification in the Cerebrospinal Fluid in Patients with Central Nervous System Lymphoma James Rubenstein, University of California, San Francisco, CA, USA |
| 3:00 | 8.3 | Progress Toward a Biomarker Discovery-to-Verification Pipeline in Clinical Proteomics Steven A. Carr, Broad Institute of MIT and Harvard, Cambridge, MA, USA |
Chair: A. L. Burlingame, University of California, San Francisco, CA, USA
| 3:40pm | 8.4 | Plenary Lecture The Protein Microscope: An Application of Cell Map Proteomics John J.M. Bergeron, McGill University, Montreal, Canada |
| 4:40pm | Closing remarks | |
| 5:00 | Adjourn | |
